PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31365
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Dof
Protein Properties Length: 215aa    MW: 23375.6 Da    PI: 9.4614
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31365genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1191.8e-372787262
                     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                               ++++l+cprCdstntkfCyynny+ sqPryfCk+CrryWt+GG+lr++PvGgg rkn k+s
  Tp57577_TGAC_v2_mRNA31365 27 EQENLPCPRCDSTNTKFCYYNNYNYSQPRYFCKGCRRYWTQGGTLRDIPVGGGNRKNAKRS 87
                               57899****************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-282485IPR003851Zinc finger, Dof-type
PfamPF027012.0E-322985IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7233185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSSSDSGESR RSTKPQNRPG PGAPAPEQEN LPCPRCDSTN TKFCYYNNYN YSQPRYFCKG  60
CRRYWTQGGT LRDIPVGGGN RKNAKRSRTQ HIAVTSSSSS SAVTSAPEHH HYQSMTPISA  120
VQGGSFPYGG NVDDEGKQNT SVSGSFTSLL NNSNTQGNFL ALGGFGFGLG QGLEEMSFGI  180
GRSGWGFPGX XXXXXXXXWW CASCVFKLMA VRRW*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446454.18e-87Dof domain zinc finger protein
SwissprotQ390885e-41DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBLA0A072TTI59e-87A0A072TTI5_MEDTR; Dof domain zinc finger protein
STRINGGLYMA02G06970.22e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28013168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.14e-38OBF binding protein 1